Index

_

_attenuation_length() (hexsample.sensor.Material method) _axial_round() (hexsample.hexagon.HexagonalGrid static method) _axial_to_offset() (hexsample.hexagon.HexagonalGrid method) _DATE_FORMAT (hexsample.fileio.OutputFileBase attribute) _FILE_TYPE (hexsample.fileio.DigiOutputFileCircular attribute) (hexsample.fileio.DigiOutputFileRectangular attribute) (hexsample.fileio.DigiOutputFileSparse attribute) (hexsample.fileio.OutputFileBase attribute) (hexsample.fileio.ReconOutputFile attribute) _fill_digi_row() (in module hexsample.fileio) _fill_digi_row_base() (in module hexsample.fileio)

_fill_digi_row_circular() (in module hexsample.fileio) _fill_digi_row_rectangular() (in module hexsample.fileio) _fill_digi_row_sparse() (in module hexsample.fileio) _fill_mc_row() (in module hexsample.fileio) _fill_recon_row() (in module hexsample.fileio) _float_axial() (hexsample.hexagon.HexagonalGrid method) _mu_components() (hexsample.sensor.Material method) _parity_offset() (hexsample.hexagon.HexagonalGrid method) _readout_class() (in module hexsample.readout) _repeat() (in module hexsample.pprint) _set_user_attribute() (hexsample.fileio.OutputFileBase static method) _user_attributes() (hexsample.fileio.InputFileBase static method)

A

absx (hexsample.mc.MonteCarloEvent attribute) absy (hexsample.mc.MonteCarloEvent attribute) absz (hexsample.mc.MonteCarloEvent attribute) adc_channel_even_q() (in module hexsample.hexagon) adc_channel_even_r() (in module hexsample.hexagon) adc_channel_odd_q() (in module hexsample.hexagon) adc_channel_odd_r() (in module hexsample.hexagon) add_row() (hexsample.fileio.DigiOutputFileCircular method) (hexsample.fileio.DigiOutputFileRectangular method) (hexsample.fileio.DigiOutputFileSparse method) (hexsample.fileio.OutputFileBase method) (hexsample.fileio.ReconOutputFile method)

ansi_format() (in module hexsample.pprint) AnsiFontEffect (class in hexsample.pprint) as_dict() (hexsample.digi.DigiEventSparse method) ascii() (hexsample.digi.DigiEventBase method) (hexsample.digi.DigiEventCircular method) (hexsample.digi.DigiEventRectangular method) (hexsample.digi.DigiEventSparse method) at_border() (hexsample.roi.RegionOfInterest method)

B

BeamBase (class in hexsample.source) BG_BLACK (hexsample.pprint.AnsiFontEffect attribute) BG_BLUE (hexsample.pprint.AnsiFontEffect attribute) BG_BRIGHT_BLACK (hexsample.pprint.AnsiFontEffect attribute) BG_BRIGHT_BLUE (hexsample.pprint.AnsiFontEffect attribute) BG_BRIGHT_CYAN (hexsample.pprint.AnsiFontEffect attribute) BG_BRIGHT_GREEN (hexsample.pprint.AnsiFontEffect attribute) BG_BRIGHT_MAGENTA (hexsample.pprint.AnsiFontEffect attribute) BG_BRIGHT_RED (hexsample.pprint.AnsiFontEffect attribute) BG_BRIGHT_WHITE (hexsample.pprint.AnsiFontEffect attribute)

BG_BRIGHT_YELLOW (hexsample.pprint.AnsiFontEffect attribute) BG_CYAN (hexsample.pprint.AnsiFontEffect attribute) BG_GREEN (hexsample.pprint.AnsiFontEffect attribute) BG_MAGENTA (hexsample.pprint.AnsiFontEffect attribute) BG_RED (hexsample.pprint.AnsiFontEffect attribute) BG_WHITE (hexsample.pprint.AnsiFontEffect attribute) BG_YELLOW (hexsample.pprint.AnsiFontEffect attribute) BOLD (hexsample.pprint.AnsiFontEffect attribute) bottom (hexsample.roi.Padding attribute) brightness() (hexsample.display.HexagonalGridDisplay static method)

C

centroid() (hexsample.clustering.Cluster method) CIRCULAR (hexsample.readout.HexagonalReadoutMode attribute) Cluster (class in hexsample.clustering) cluster (hexsample.recon.ReconEvent attribute) (hexsample.recon.ReconEventBase attribute) ClusteringBase (class in hexsample.clustering) ClusteringNN (class in hexsample.clustering) COHERENT (hexsample.sensor.CrossSection attribute) coherent_attenuation_length() (hexsample.sensor.Material method)

coherent_mu_components() (hexsample.sensor.Material method) col_indexes() (hexsample.roi.RegionOfInterest method) column (hexsample.digi.DigiEventCircular attribute) column() (hexsample.fileio.DigiInputFileBase method) (hexsample.fileio.ReconInputFile method) columns (hexsample.digi.DigiEventSparse attribute) COLUMNS_ARRAY_SPECS (hexsample.fileio.DigiOutputFileSparse attribute) create_histogram() (in module hexsample.analysis) CrossSection (class in hexsample.sensor)

D

DIGI (hexsample.fileio.FileType attribute) digi_event() (hexsample.fileio.DigiInputFileCircular method) (hexsample.fileio.DigiInputFileRectangular method) (hexsample.fileio.DigiInputFileSparse method) DIGI_TABLE_SPECS (hexsample.fileio.DigiOutputFileCircular attribute) (hexsample.fileio.DigiOutputFileRectangular attribute) (hexsample.fileio.DigiOutputFileSparse attribute) DigiEventBase (class in hexsample.digi) DigiEventCircular (class in hexsample.digi) DigiEventRectangular (class in hexsample.digi) DigiEventSparse (class in hexsample.digi) DigiInputFileBase (class in hexsample.fileio) DigiInputFileCircular (class in hexsample.fileio)

DigiInputFileRectangular (class in hexsample.fileio) DigiInputFileSparse (class in hexsample.fileio) digioutput_class() (in module hexsample.fileio) DigiOutputFileCircular (class in hexsample.fileio) DigiOutputFileRectangular (class in hexsample.fileio) DigiOutputFileSparse (class in hexsample.fileio) digitize() (hexsample.readout.HexagonalReadoutBase method) discriminate() (hexsample.readout.HexagonalReadoutBase static method) DiskBeam (class in hexsample.source) double_heatmap() (in module hexsample.analysis) draw() (hexsample.display.HexagonalGridDisplay method) draw_digi_event() (hexsample.display.HexagonalGridDisplay method) draw_roi() (hexsample.display.HexagonalGridDisplay method)

E

energy (hexsample.mc.MonteCarloEvent attribute) energy() (hexsample.recon.ReconEvent method) (hexsample.recon.ReconEventBase method)

even() (hexsample.hexagon.HexagonalGrid method) EVEN_Q (hexsample.hexagon.HexagonalLayout attribute) EVEN_R (hexsample.hexagon.HexagonalLayout attribute)

F

FG_BLACK (hexsample.pprint.AnsiFontEffect attribute) FG_BLUE (hexsample.pprint.AnsiFontEffect attribute) FG_BRIGHT_BLACK (hexsample.pprint.AnsiFontEffect attribute) FG_BRIGHT_BLUE (hexsample.pprint.AnsiFontEffect attribute) FG_BRIGHT_CYAN (hexsample.pprint.AnsiFontEffect attribute) FG_BRIGHT_GREEN (hexsample.pprint.AnsiFontEffect attribute) FG_BRIGHT_MAGENTA (hexsample.pprint.AnsiFontEffect attribute) FG_BRIGHT_RED (hexsample.pprint.AnsiFontEffect attribute) FG_BRIGHT_WHITE (hexsample.pprint.AnsiFontEffect attribute) FG_BRIGHT_YELLOW (hexsample.pprint.AnsiFontEffect attribute) FG_CYAN (hexsample.pprint.AnsiFontEffect attribute) FG_GREEN (hexsample.pprint.AnsiFontEffect attribute) FG_MAGENTA (hexsample.pprint.AnsiFontEffect attribute) FG_RED (hexsample.pprint.AnsiFontEffect attribute)

FG_WHITE (hexsample.pprint.AnsiFontEffect attribute) FG_YELLOW (hexsample.pprint.AnsiFontEffect attribute) FileType (class in hexsample.fileio) fit_gaussian_iterative() (in module hexsample.fitting) flat_topped() (hexsample.hexagon.HexagonalGrid method) fluorescence_yield() (hexsample.sensor.Material method) flush() (hexsample.fileio.DigiOutputFileCircular method) (hexsample.fileio.DigiOutputFileRectangular method) (hexsample.fileio.DigiOutputFileSparse method) (hexsample.fileio.OutputFileBase method) (hexsample.fileio.ReconOutputFile method) from_digi() (hexsample.digi.DigiEventBase class method) (hexsample.digi.DigiEventCircular class method) (hexsample.digi.DigiEventRectangular class method) (hexsample.digi.DigiEventSparse class method)

G

GaussianBeam (class in hexsample.source)

grid (hexsample.clustering.ClusteringBase attribute)

H

header_value() (hexsample.fileio.InputFileBase method) heatmap_with_labels() (in module hexsample.analysis) hexagon_orientation() (hexsample.hexagon.HexagonalGrid method) HexagonalGrid (class in hexsample.hexagon) HexagonalGridDisplay (class in hexsample.display) HexagonalLayout (class in hexsample.hexagon) HexagonalReadoutBase (class in hexsample.readout) HexagonalReadoutCircular (class in hexsample.readout) HexagonalReadoutMode (class in hexsample.readout) HexagonalReadoutRectangular (class in hexsample.readout) HexagonalReadoutSparse (class in hexsample.readout) HexagonCollection (class in hexsample.display) hexsample.analysis module hexsample.clustering module hexsample.digi module hexsample.display module hexsample.fileio module

hexsample.fitting module hexsample.hexagon module hexsample.mc module hexsample.pprint module hexsample.readout module hexsample.recon module hexsample.rng module hexsample.roi module hexsample.sensor module hexsample.source module highest_pixel() (hexsample.digi.DigiEventRectangular method)

I

in_rot() (hexsample.roi.RegionOfInterest method) INCOHERENT (hexsample.sensor.CrossSection attribute) incoherent_attenuation_length() (hexsample.sensor.Material method) incoherent_mu_components() (hexsample.sensor.Material method)

initialize() (in module hexsample.rng) InputFileBase (class in hexsample.fileio) is_even() (hexsample.readout.HexagonalReadoutRectangular static method) is_odd() (hexsample.readout.HexagonalReadoutRectangular static method)

L

latch_timestamp() (hexsample.readout.HexagonalReadoutBase static method) left (hexsample.roi.Padding attribute) line() (in module hexsample.pprint)

LineForest (class in hexsample.source) livetime (hexsample.digi.DigiEventBase attribute) (hexsample.recon.ReconEvent attribute) (hexsample.recon.ReconEventBase attribute)

M

Material (class in hexsample.sensor) max_col (hexsample.roi.RegionOfInterest attribute) max_row (hexsample.roi.RegionOfInterest attribute) mc_column() (hexsample.fileio.DigiInputFileBase method) (hexsample.fileio.ReconInputFile method) mc_event() (hexsample.fileio.DigiInputFileBase method) MC_TABLE_SPECS (hexsample.fileio.DigiOutputFileCircular attribute) (hexsample.fileio.DigiOutputFileRectangular attribute) (hexsample.fileio.DigiOutputFileSparse attribute) (hexsample.fileio.ReconOutputFile attribute) microseconds (hexsample.digi.DigiEventBase attribute) min_col (hexsample.roi.RegionOfInterest attribute) min_row (hexsample.roi.RegionOfInterest attribute) module hexsample.analysis hexsample.clustering hexsample.digi hexsample.display hexsample.fileio hexsample.fitting hexsample.hexagon hexsample.mc hexsample.pprint hexsample.readout hexsample.recon hexsample.rng hexsample.roi hexsample.sensor hexsample.source

MonteCarloEvent (class in hexsample.mc)

N

neighbors_even_q() (in module hexsample.hexagon) neighbors_even_r() (in module hexsample.hexagon) neighbors_odd_q() (in module hexsample.hexagon)

neighbors_odd_r() (in module hexsample.hexagon) num_neighbors (hexsample.clustering.ClusteringNN attribute) num_pairs (hexsample.mc.MonteCarloEvent attribute) NUM_PIXELS (hexsample.readout.HexagonalReadoutCircular attribute)

O

odd() (hexsample.hexagon.HexagonalGrid method) ODD_Q (hexsample.hexagon.HexagonalLayout attribute)

ODD_R (hexsample.hexagon.HexagonalLayout attribute) open_input_file() (in module hexsample.fileio) OutputFileBase (class in hexsample.fileio)

P

Padding (class in hexsample.roi) padding (hexsample.roi.RegionOfInterest attribute) peek_file_type() (in module hexsample.fileio) peek_readout_type() (in module hexsample.fileio) pha (hexsample.clustering.Cluster attribute) (hexsample.digi.DigiEventBase attribute) PHA_ARRAY_SPECS (hexsample.fileio.DigiOutputFileRectangular attribute) (hexsample.fileio.DigiOutputFileSparse attribute) pha_to_colors() (hexsample.display.HexagonalGridDisplay method) photabsorption_efficiency() (hexsample.sensor.Sensor method) PHOTOELECTRIC (hexsample.sensor.CrossSection attribute) photoelectric_attenuation_length() (hexsample.sensor.Material method)

photoelectric_mu_components() (hexsample.sensor.Material method) PhotonList (class in hexsample.mc) pixel_logical_coordinates() (hexsample.hexagon.HexagonalGrid method) pixel_physical_coordinates() (hexsample.hexagon.HexagonalGrid method) pixel_to_world() (hexsample.hexagon.HexagonalGrid method) plot() (hexsample.source.LineForest method) (hexsample.source.SpectrumBase method) PointBeam (class in hexsample.source) pointy_topped() (hexsample.hexagon.HexagonalGrid method) position() (hexsample.recon.ReconEvent method) (hexsample.recon.ReconEventBase method) propagate() (hexsample.mc.MonteCarloEvent method) pulse_height() (hexsample.clustering.Cluster method)

R

radius (hexsample.source.DiskBeam attribute) read() (hexsample.readout.HexagonalReadoutCircular method) (hexsample.readout.HexagonalReadoutRectangular method) (hexsample.readout.HexagonalReadoutSparse method) readout_chip() (in module hexsample.readout) RECON (hexsample.fileio.FileType attribute) RECON_TABLE_SPECS (hexsample.fileio.ReconOutputFile attribute) ReconEvent (class in hexsample.recon) ReconEventBase (class in hexsample.recon) ReconInputFile (class in hexsample.fileio) ReconOutputFile (class in hexsample.fileio) RECTANGULAR (hexsample.readout.HexagonalReadoutMode attribute) RegionOfInterest (class in hexsample.roi) RESET (hexsample.pprint.AnsiFontEffect attribute) reset() (in module hexsample.rng) right (hexsample.roi.Padding attribute) roi (hexsample.digi.DigiEventRectangular attribute) rot_mask() (hexsample.roi.RegionOfInterest method)

rot_slice() (hexsample.roi.RegionOfInterest method) row (hexsample.digi.DigiEventCircular attribute) row_indexes() (hexsample.roi.RegionOfInterest method) rows (hexsample.digi.DigiEventSparse attribute) ROWS_ARRAY_SPECS (hexsample.fileio.DigiOutputFileSparse attribute) run() (hexsample.clustering.ClusteringBase method) (hexsample.clustering.ClusteringNN method) rvs() (hexsample.source.BeamBase method) (hexsample.source.DiskBeam method) (hexsample.source.GaussianBeam method) (hexsample.source.LineForest method) (hexsample.source.PointBeam method) (hexsample.source.Source method) (hexsample.source.SpectrumBase method) rvs_absorption_depth() (hexsample.sensor.Sensor method) rvs_absz() (hexsample.sensor.Sensor method) rvs_num_pairs() (hexsample.sensor.Material method) rvs_timestamp() (hexsample.source.Source method)

S

sample() (hexsample.readout.HexagonalReadoutRectangular method) seconds (hexsample.digi.DigiEventBase attribute) Sensor (class in hexsample.sensor) serial_readout_coordinates() (hexsample.roi.RegionOfInterest method) serial_readout_indexes() (hexsample.roi.RegionOfInterest method) set() (hexsample.display.HexagonCollection method) setup_gca() (hexsample.display.HexagonalGridDisplay static method) shape() (hexsample.roi.RegionOfInterest method)

show() (hexsample.display.HexagonalGridDisplay static method) sigma (hexsample.source.GaussianBeam attribute) SiliconSensor (class in hexsample.sensor) size() (hexsample.clustering.Cluster method) Source (class in hexsample.source) space() (in module hexsample.pprint) SPARSE (hexsample.readout.HexagonalReadoutMode attribute) SpectrumBase (class in hexsample.source) sum_miniclusters() (hexsample.readout.HexagonalReadoutRectangular static method)

T

timestamp (hexsample.mc.MonteCarloEvent attribute) (hexsample.recon.ReconEvent attribute) (hexsample.recon.ReconEventBase attribute) timestamp() (hexsample.digi.DigiEventBase method) top (hexsample.roi.Padding attribute) TOTAL (hexsample.sensor.CrossSection attribute)

total_attenuation_length() (hexsample.sensor.Material method) total_mu_components() (hexsample.sensor.Material method) trigger() (hexsample.readout.HexagonalReadoutRectangular method) trigger_id (hexsample.digi.DigiEventBase attribute) (hexsample.recon.ReconEvent attribute) (hexsample.recon.ReconEventBase attribute)

U

UNDERLINE (hexsample.pprint.AnsiFontEffect attribute) UninitializedGenerator (class in hexsample.rng)

update_digi_header() (hexsample.fileio.ReconOutputFile method) update_header() (hexsample.fileio.OutputFileBase method) update_user_attributes() (hexsample.fileio.OutputFileBase static method)

W

world_to_pixel() (hexsample.hexagon.HexagonalGrid method)

X

x (hexsample.clustering.Cluster attribute)

x0 (hexsample.source.BeamBase attribute) Xpol3 (class in hexsample.readout)

Y

y (hexsample.clustering.Cluster attribute)

y0 (hexsample.source.BeamBase attribute)

Z

zero_sup_threshold (hexsample.clustering.ClusteringBase attribute)

zero_suppress() (hexsample.clustering.ClusteringBase method) (hexsample.readout.HexagonalReadoutBase static method)