Index

_

_abc_impl (hexsample.base.AbstractPlottable attribute) (hexsample.base.AbstractRandomGenerator attribute) (hexsample.readout.AbstractReadout attribute) (hexsample.readout.HexagonalReadoutBase attribute) (hexsample.readout.HexagonalReadoutCircular attribute) (hexsample.readout.HexagonalReadoutRectangular attribute) (hexsample.source.DiskBeam attribute) (hexsample.source.GaussianBeam attribute) (hexsample.source.HexagonalBeam attribute) (hexsample.source.Line attribute) (hexsample.source.LineForest attribute) (hexsample.source.PointBeam attribute) (hexsample.source.TriangularBeam attribute) _attenuation_length() (hexsample.sensor.Material method) _axial_round() (hexsample.hexagon.HexagonalGrid static method) _axial_to_offset() (hexsample.hexagon.HexagonalGrid method) _cls() (hexsample.base.TypeProxy method) _DATE_FORMAT (hexsample.fileio.OutputFileBase attribute) _DESCRIPTION (hexsample.cli.CliArgumentParser attribute) _EPILOG (hexsample.cli.CliArgumentParser attribute)

_FILE_TYPE (hexsample.fileio.DigiOutputFileCircular attribute) (hexsample.fileio.DigiOutputFileRectangular attribute) (hexsample.fileio.OutputFileBase attribute) (hexsample.fileio.ReconOutputFile attribute) _fill_digi_row() (in module hexsample.fileio) _fill_digi_row_base() (in module hexsample.fileio) _fill_digi_row_circular() (in module hexsample.fileio) _fill_digi_row_rectangular() (in module hexsample.fileio) _fill_mc_row() (in module hexsample.fileio) _fill_recon_row() (in module hexsample.fileio) _float_axial() (hexsample.hexagon.HexagonalGrid method) _Formatter (class in hexsample.cli) _FORMATTER_CLASS (hexsample.cli.CliArgumentParser attribute) _mu_components() (hexsample.sensor.Material method) _parity_offset() (hexsample.hexagon.HexagonalGrid method) _proxy_dict (hexsample.base.TypeProxy attribute) _readout_class() (in module hexsample.readout) _repeat() (in module hexsample.pretty) _set_user_attribute() (hexsample.fileio.OutputFileBase static method) _user_attributes() (hexsample.fileio.InputFileBase static method)

A

AbstractPlottable (class in hexsample.base) AbstractRandomGenerator (class in hexsample.base) AbstractReadout (class in hexsample.readout) absx (hexsample.mc.MonteCarloEvent attribute) absy (hexsample.mc.MonteCarloEvent attribute) absz (hexsample.mc.MonteCarloEvent attribute) adc_channel_even_q() (in module hexsample.hexagon) adc_channel_even_r() (in module hexsample.hexagon) adc_channel_odd_q() (in module hexsample.hexagon) adc_channel_odd_r() (in module hexsample.hexagon) add_display_options() (hexsample.cli.CliArgumentParser method) add_input_file() (hexsample.cli.CliArgumentParser static method) add_logging_level() (hexsample.cli.CliArgumentParser static method) add_num_events() (hexsample.cli.CliArgumentParser static method) add_output_file() (hexsample.cli.CliArgumentParser static method) add_random_seed() (hexsample.cli.CliArgumentParser static method)

add_readout_options() (hexsample.cli.CliArgumentParser static method) add_recon_options() (hexsample.cli.CliArgumentParser method) add_row() (hexsample.fileio.DigiOutputFileCircular method) (hexsample.fileio.DigiOutputFileRectangular method) (hexsample.fileio.OutputFileBase method) (hexsample.fileio.ReconOutputFile method) add_sensor_options() (hexsample.cli.CliArgumentParser static method) add_source_options() (hexsample.cli.CliArgumentParser static method) add_suffix() (hexsample.cli.CliArgumentParser static method) add_zero_sup_threshold() (hexsample.cli.CliArgumentParser static method) ansi_format() (in module hexsample.pretty) AnsiFontEffect (class in hexsample.pretty) ascii() (hexsample.digi.DigiEventBase method) (hexsample.digi.DigiEventCircular method) (hexsample.digi.DigiEventRectangular method) at_border() (hexsample.roi.RegionOfInterest method)

B

beam (hexsample.source.Source attribute) BG_BLACK (hexsample.pretty.AnsiFontEffect attribute) BG_BLUE (hexsample.pretty.AnsiFontEffect attribute) BG_BRIGHT_BLACK (hexsample.pretty.AnsiFontEffect attribute) BG_BRIGHT_BLUE (hexsample.pretty.AnsiFontEffect attribute) BG_BRIGHT_CYAN (hexsample.pretty.AnsiFontEffect attribute) BG_BRIGHT_GREEN (hexsample.pretty.AnsiFontEffect attribute) BG_BRIGHT_MAGENTA (hexsample.pretty.AnsiFontEffect attribute) BG_BRIGHT_RED (hexsample.pretty.AnsiFontEffect attribute)

BG_BRIGHT_WHITE (hexsample.pretty.AnsiFontEffect attribute) BG_BRIGHT_YELLOW (hexsample.pretty.AnsiFontEffect attribute) BG_CYAN (hexsample.pretty.AnsiFontEffect attribute) BG_GREEN (hexsample.pretty.AnsiFontEffect attribute) BG_MAGENTA (hexsample.pretty.AnsiFontEffect attribute) BG_RED (hexsample.pretty.AnsiFontEffect attribute) BG_WHITE (hexsample.pretty.AnsiFontEffect attribute) BG_YELLOW (hexsample.pretty.AnsiFontEffect attribute) BOLD (hexsample.pretty.AnsiFontEffect attribute) bottom (hexsample.roi.Padding attribute)

C

calculate_eta() (hexsample.clustering.Cluster method) centroid() (hexsample.clustering.Cluster method) choices() (hexsample.base.TypeProxy method) CIRCULAR (hexsample.readout.HexagonalReadoutMode attribute) CliArgumentParser (class in hexsample.cli) Cluster (class in hexsample.clustering) cluster (hexsample.recon.ReconEvent attribute) (hexsample.recon.ReconEventBase attribute) ClusteringBase (class in hexsample.clustering) ClusteringNN (class in hexsample.clustering) COHERENT (hexsample.sensor.CrossSection attribute)

coherent_attenuation_length() (hexsample.sensor.Material method) coherent_mu_components() (hexsample.sensor.Material method) col_indexes() (hexsample.roi.RegionOfInterest method) column (hexsample.digi.DigiEventCircular attribute) column() (hexsample.fileio.DigiInputFileBase method) (hexsample.fileio.ReconInputFile method) create() (hexsample.base.TypeProxy method) create_histogram() (in module hexsample.analysis) create_rotator() (hexsample.hexagon.HexagonalGrid static method) CrossSection (class in hexsample.sensor) current_call() (in module hexsample.tasks)

D

default() (hexsample.base.TypeProxy method) diffusion_sigma (hexsample.sensor.Sensor attribute) DIGI (hexsample.fileio.FileType attribute) digi_event() (hexsample.fileio.DigiInputFileCircular method) (hexsample.fileio.DigiInputFileRectangular method) digi_input_file_class() (in module hexsample.fileio) digi_output_file_class() (in module hexsample.fileio) DIGI_TABLE_SPECS (hexsample.fileio.DigiOutputFileCircular attribute) (hexsample.fileio.DigiOutputFileRectangular attribute) DigiEventBase (class in hexsample.digi) DigiEventCircular (class in hexsample.digi) DigiEventRectangular (class in hexsample.digi) DigiInputFileBase (class in hexsample.fileio) DigiInputFileCircular (class in hexsample.fileio) DigiInputFileRectangular (class in hexsample.fileio)

digioutput_class() (in module hexsample.fileio) DigiOutputFileCircular (class in hexsample.fileio) DigiOutputFileRectangular (class in hexsample.fileio) digitize() (hexsample.readout.HexagonalReadoutBase method) discriminate() (hexsample.readout.HexagonalReadoutBase static method) DiskBeam (class in hexsample.source) display() (in module hexsample.pipeline) (in module hexsample.tasks) DisplayDefaults (class in hexsample.tasks) double_heatmap() (in module hexsample.analysis) draw() (hexsample.display.HexagonalGridDisplay method) draw_digi_event() (hexsample.display.HexagonalGridDisplay method) draw_digi_event_circular() (hexsample.display.HexagonalGridDisplay method) draw_digi_event_rectangular() (hexsample.display.HexagonalGridDisplay method) draw_positions() (hexsample.display.HexagonalGridDisplay method) draw_roi() (hexsample.display.HexagonalGridDisplay method)

E

element (hexsample.source.LineForest attribute) enc (hexsample.readout.HexagonalReadoutBase attribute) energy (hexsample.mc.MonteCarloEvent attribute) (hexsample.source.Line attribute) energy() (hexsample.recon.ReconEvent method) (hexsample.recon.ReconEventBase method) eta() (hexsample.clustering.Cluster method) eta_2pix_pivot (hexsample.recon.ReconEvent attribute) (hexsample.tasks.ReconstructionDefaults attribute) eta_2pix_rad (hexsample.recon.ReconEvent attribute) (hexsample.tasks.ReconstructionDefaults attribute)

eta_3pix_rad0 (hexsample.recon.ReconEvent attribute) (hexsample.tasks.ReconstructionDefaults attribute) eta_3pix_rad1 (hexsample.recon.ReconEvent attribute) (hexsample.tasks.ReconstructionDefaults attribute) eta_3pix_rad_pivot (hexsample.recon.ReconEvent attribute) (hexsample.tasks.ReconstructionDefaults attribute) eta_3pix_theta0 (hexsample.recon.ReconEvent attribute) (hexsample.tasks.ReconstructionDefaults attribute) even() (hexsample.hexagon.HexagonalGrid method) EVEN_Q (hexsample.hexagon.HexagonalLayout attribute) EVEN_R (hexsample.hexagon.HexagonalLayout attribute) event_id (hexsample.tasks.DisplayDefaults attribute)

F

fano_factor (hexsample.sensor.Sensor attribute) FG_BLACK (hexsample.pretty.AnsiFontEffect attribute) FG_BLUE (hexsample.pretty.AnsiFontEffect attribute) FG_BRIGHT_BLACK (hexsample.pretty.AnsiFontEffect attribute) FG_BRIGHT_BLUE (hexsample.pretty.AnsiFontEffect attribute) FG_BRIGHT_CYAN (hexsample.pretty.AnsiFontEffect attribute) FG_BRIGHT_GREEN (hexsample.pretty.AnsiFontEffect attribute) FG_BRIGHT_MAGENTA (hexsample.pretty.AnsiFontEffect attribute) FG_BRIGHT_RED (hexsample.pretty.AnsiFontEffect attribute) FG_BRIGHT_WHITE (hexsample.pretty.AnsiFontEffect attribute) FG_BRIGHT_YELLOW (hexsample.pretty.AnsiFontEffect attribute) FG_CYAN (hexsample.pretty.AnsiFontEffect attribute) FG_GREEN (hexsample.pretty.AnsiFontEffect attribute) FG_MAGENTA (hexsample.pretty.AnsiFontEffect attribute) FG_RED (hexsample.pretty.AnsiFontEffect attribute) FG_WHITE (hexsample.pretty.AnsiFontEffect attribute)

FG_YELLOW (hexsample.pretty.AnsiFontEffect attribute) FileType (class in hexsample.fileio) filter_dataclass_kwargs() (hexsample.base.TypeProxy static method) find_vertices() (hexsample.hexagon.HexagonalGrid method) flat_topped() (hexsample.hexagon.HexagonalGrid method) fluorescence_yield() (hexsample.sensor.Material method) flush() (hexsample.fileio.DigiOutputFileCircular method) (hexsample.fileio.DigiOutputFileRectangular method) (hexsample.fileio.OutputFileBase method) (hexsample.fileio.ReconOutputFile method) from_digi() (hexsample.digi.DigiEventBase class method) (hexsample.digi.DigiEventCircular class method) (hexsample.digi.DigiEventRectangular class method) from_filtered_kwargs() (hexsample.base.TypeProxy method) (hexsample.sensor.Sensor class method) (hexsample.source.Source class method)

G

gain (hexsample.readout.HexagonalReadoutBase attribute)

GaussianBeam (class in hexsample.source) grid (hexsample.clustering.ClusteringBase attribute)

H

header_value() (hexsample.fileio.InputFileBase method) heatmap_with_labels() (in module hexsample.analysis) hexagon_orientation() (hexsample.hexagon.HexagonalGrid method) HexagonalBeam (class in hexsample.source) HexagonalGrid (class in hexsample.hexagon) HexagonalGridDisplay (class in hexsample.display) HexagonalLayout (class in hexsample.hexagon) HexagonalReadoutBase (class in hexsample.readout) HexagonalReadoutCircular (class in hexsample.readout) HexagonalReadoutMode (class in hexsample.readout) HexagonalReadoutRectangular (class in hexsample.readout) HexagonCollection (class in hexsample.display) hexsample.analysis module hexsample.base module hexsample.cli module hexsample.clustering module hexsample.digi module hexsample.display module

hexsample.fileio module hexsample.hexagon module hexsample.mc module hexsample.pipeline module hexsample.pretty module hexsample.readout module hexsample.recon module hexsample.rng module hexsample.roi module hexsample.sensor module hexsample.source module hexsample.tasks module highest_pixel() (hexsample.digi.DigiEventRectangular method)

I

in_rot() (hexsample.roi.RegionOfInterest method) INCOHERENT (hexsample.sensor.CrossSection attribute) incoherent_attenuation_length() (hexsample.sensor.Material method) incoherent_mu_components() (hexsample.sensor.Material method)

initial_level (hexsample.source.LineForest attribute) initialize() (in module hexsample.rng) InputFileBase (class in hexsample.fileio) is_even() (hexsample.readout.HexagonalReadoutBase static method) is_odd() (hexsample.readout.HexagonalReadoutBase static method)

K

key() (hexsample.base.TypeProxy method)

L

latch_timestamp() (hexsample.readout.HexagonalReadoutBase static method) layout (hexsample.hexagon.HexagonalGrid attribute) left (hexsample.roi.Padding attribute) Line (class in hexsample.source)

line() (in module hexsample.pretty) LineForest (class in hexsample.source) livetime (hexsample.digi.DigiEventBase attribute) (hexsample.recon.ReconEvent attribute) (hexsample.recon.ReconEventBase attribute)

M

main() (in module hexsample.cli) Material (class in hexsample.sensor) material() (in module hexsample.sensor) material_symbol (hexsample.sensor.Sensor attribute) material_symbols() (in module hexsample.sensor) max_col (hexsample.roi.RegionOfInterest attribute) max_neighbors (hexsample.tasks.ReconstructionDefaults attribute) max_row (hexsample.roi.RegionOfInterest attribute) mc_column() (hexsample.fileio.DigiInputFileBase method) (hexsample.fileio.ReconInputFile method) mc_event() (hexsample.fileio.DigiInputFileBase method) MC_TABLE_SPECS (hexsample.fileio.DigiOutputFileCircular attribute) (hexsample.fileio.DigiOutputFileRectangular attribute) (hexsample.fileio.ReconOutputFile attribute) method (hexsample.recon.ReconEvent attribute) microseconds (hexsample.digi.DigiEventBase attribute) min_col (hexsample.roi.RegionOfInterest attribute) min_row (hexsample.roi.RegionOfInterest attribute) module hexsample.analysis hexsample.base hexsample.cli hexsample.clustering hexsample.digi hexsample.display hexsample.fileio hexsample.hexagon hexsample.mc hexsample.pipeline hexsample.pretty hexsample.readout hexsample.recon hexsample.rng hexsample.roi hexsample.sensor hexsample.source hexsample.tasks

MonteCarloEvent (class in hexsample.mc)

N

neighbors_even_q() (in module hexsample.hexagon) neighbors_even_r() (in module hexsample.hexagon) neighbors_odd_q() (in module hexsample.hexagon) neighbors_odd_r() (in module hexsample.hexagon) num_cols (hexsample.hexagon.HexagonalGrid attribute) num_events (hexsample.tasks.SimulationDefaults attribute)

num_neighbors (hexsample.clustering.ClusteringNN attribute) (hexsample.tasks.DisplayDefaults attribute) (hexsample.tasks.ReconstructionDefaults attribute) num_pairs (hexsample.mc.MonteCarloEvent attribute) NUM_PIXELS (hexsample.readout.HexagonalReadoutCircular attribute) num_rows (hexsample.hexagon.HexagonalGrid attribute)

O

odd() (hexsample.hexagon.HexagonalGrid method) ODD_Q (hexsample.hexagon.HexagonalLayout attribute) ODD_R (hexsample.hexagon.HexagonalLayout attribute)

open_input_file() (in module hexsample.fileio) output_file_path (hexsample.tasks.SimulationDefaults attribute) OutputFileBase (class in hexsample.fileio)

P

Padding (class in hexsample.roi) padding (hexsample.readout.HexagonalReadoutRectangular attribute) (hexsample.roi.RegionOfInterest attribute) peek_file_type() (in module hexsample.fileio) peek_readout_type() (in module hexsample.fileio) pha (hexsample.clustering.Cluster attribute) (hexsample.digi.DigiEventBase attribute) PHA_ARRAY_SPECS (hexsample.fileio.DigiOutputFileRectangular attribute) photabsorption_efficiency() (hexsample.sensor.Sensor method) PHOTOELECTRIC (hexsample.sensor.CrossSection attribute) photoelectric_attenuation_length() (hexsample.sensor.Material method) photoelectric_mu_components() (hexsample.sensor.Material method) PhotonList (class in hexsample.mc)

pitch (hexsample.hexagon.HexagonalGrid attribute) (hexsample.recon.ReconEvent attribute) pixel_logical_coordinates() (hexsample.hexagon.HexagonalGrid method) pixel_physical_coordinates() (hexsample.hexagon.HexagonalGrid method) pixel_to_world() (hexsample.hexagon.HexagonalGrid method) plot() (hexsample.base.AbstractPlottable method) PointBeam (class in hexsample.source) pointy_topped() (hexsample.hexagon.HexagonalGrid method) pos_recon_algorithm (hexsample.tasks.ReconstructionDefaults attribute) position() (hexsample.recon.ReconEvent method) (hexsample.recon.ReconEventBase method) position_suppress() (hexsample.clustering.ClusteringBase method) propagate() (hexsample.mc.MonteCarloEvent method) pulse_height() (hexsample.clustering.Cluster method)

Q

quicklook() (in module hexsample.pipeline) (in module hexsample.tasks)

QuickLookDefaults (class in hexsample.tasks)

R

radius (hexsample.source.DiskBeam attribute) random_seed (hexsample.tasks.SimulationDefaults attribute) rate (hexsample.source.Source attribute) read() (hexsample.readout.AbstractReadout method) (hexsample.readout.HexagonalReadoutCircular method) (hexsample.readout.HexagonalReadoutRectangular method) readout_chip() (in module hexsample.readout) RECON (hexsample.fileio.FileType attribute) RECON_TABLE_SPECS (hexsample.fileio.ReconOutputFile attribute) ReconEvent (class in hexsample.recon) ReconEventBase (class in hexsample.recon) ReconInputFile (class in hexsample.fileio) ReconOutputFile (class in hexsample.fileio) reconstruct() (in module hexsample.pipeline) (in module hexsample.tasks) ReconstructionDefaults (class in hexsample.tasks) RECTANGULAR (hexsample.readout.HexagonalReadoutMode attribute) RegionOfInterest (class in hexsample.roi) register() (hexsample.base.TypeProxy method) render() (hexsample.base.AbstractPlottable method) (hexsample.source.Line method) (hexsample.source.LineForest method)

RESET (hexsample.pretty.AnsiFontEffect attribute) reset() (in module hexsample.rng) right (hexsample.roi.Padding attribute) roi (hexsample.digi.DigiEventRectangular attribute) rot_mask() (hexsample.roi.RegionOfInterest method) rot_slice() (hexsample.roi.RegionOfInterest method) row (hexsample.digi.DigiEventCircular attribute) row_indexes() (hexsample.roi.RegionOfInterest method) run() (hexsample.cli.CliArgumentParser method) (hexsample.clustering.ClusteringBase method) (hexsample.clustering.ClusteringNN method) rvs() (hexsample.base.AbstractRandomGenerator method) (hexsample.source.DiskBeam method) (hexsample.source.GaussianBeam method) (hexsample.source.HexagonalBeam method) (hexsample.source.Line method) (hexsample.source.LineForest method) (hexsample.source.PointBeam method) (hexsample.source.Source method) (hexsample.source.TriangularBeam method) rvs_absorption_depth() (hexsample.sensor.Sensor method) rvs_absz() (hexsample.sensor.Sensor method) rvs_num_pairs() (hexsample.sensor.Material method)

S

sample() (hexsample.readout.HexagonalReadoutRectangular method) seconds (hexsample.digi.DigiEventBase attribute) Sensor (class in hexsample.sensor) serial_readout_coordinates() (hexsample.roi.RegionOfInterest method) serial_readout_indexes() (hexsample.roi.RegionOfInterest method) set() (hexsample.display.HexagonCollection method) setup_gca() (hexsample.display.HexagonalGridDisplay static method) shape() (hexsample.roi.RegionOfInterest method) show() (hexsample.display.HexagonalGridDisplay static method) sigma (hexsample.source.GaussianBeam attribute)

simulate() (in module hexsample.pipeline) (in module hexsample.tasks) SimulationDefaults (class in hexsample.tasks) size() (hexsample.clustering.Cluster method) Source (class in hexsample.source) space() (in module hexsample.pretty) spectrum (hexsample.source.Source attribute) start_message() (in module hexsample.cli) suffix (hexsample.tasks.ReconstructionDefaults attribute) sum_miniclusters() (hexsample.readout.HexagonalReadoutRectangular static method)

T

thickness (hexsample.sensor.Sensor attribute) timestamp (hexsample.mc.MonteCarloEvent attribute) (hexsample.recon.ReconEvent attribute) (hexsample.recon.ReconEventBase attribute) timestamp() (hexsample.digi.DigiEventBase method) top (hexsample.roi.Padding attribute) TOTAL (hexsample.sensor.CrossSection attribute) total_attenuation_length() (hexsample.sensor.Material method)

total_mu_components() (hexsample.sensor.Material method) trg_threshold (hexsample.readout.HexagonalReadoutBase attribute) TriangularBeam (class in hexsample.source) trigger() (hexsample.readout.HexagonalReadoutRectangular method) trigger_id (hexsample.digi.DigiEventBase attribute) (hexsample.recon.ReconEvent attribute) (hexsample.recon.ReconEventBase attribute) TypeProxy (class in hexsample.base)

U

UNDERLINE (hexsample.pretty.AnsiFontEffect attribute) UninitializedGenerator (class in hexsample.rng)

update_digi_header() (hexsample.fileio.ReconOutputFile method) update_header() (hexsample.fileio.OutputFileBase method) update_user_attributes() (hexsample.fileio.OutputFileBase static method)

V

v0 (hexsample.source.HexagonalBeam attribute) v1 (hexsample.source.HexagonalBeam attribute) (hexsample.source.TriangularBeam attribute)

v2 (hexsample.source.TriangularBeam attribute) values() (hexsample.hexagon.HexagonalLayout class method) versors() (hexsample.clustering.Cluster method)

W

world_to_pixel() (hexsample.hexagon.HexagonalGrid method)

X

x (hexsample.clustering.Cluster attribute)

Y

y (hexsample.clustering.Cluster attribute)

Z

zero_sup_threshold (hexsample.clustering.ClusteringBase attribute) (hexsample.readout.HexagonalReadoutBase attribute) (hexsample.tasks.DisplayDefaults attribute) (hexsample.tasks.ReconstructionDefaults attribute)

zero_suppress() (hexsample.clustering.ClusteringBase method) (hexsample.readout.HexagonalReadoutBase static method)